Georeferencing
.
Ornithological Gazetteers of South America
Georeference resources (HerpNET)
Transcriptomics/Genomics
.
NGS data cleaning using trimmomatic
de novo reconstruction of transcriptomes using ABySS
de novo reconstruction of transcriptomes using megahit
de novo reconstruction of transcriptomes using spades
de novo reconstruction of transcriptomes using trinity
de novo transcriptome assembly quality analysis using Transrate
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads
KEGG: Kyoto Encyclopedia of Genes and Genomes
Structural equation modeling (SEM)
.
Structural Equation Modeling in MPlus (Discussion Board)
Structural Equation Modeling in R ('lavaan' package)
Structural Equation Modeling in R ('sem' package)
Scientific Graphing in R
.
'ggplot2' package plotting system
'lattice' package for multivariate data visualization
color palettes for graphing (colorbrewer2.org)
color palettes for graphing (colourlovers.com)
Phylogenetics
.
CRAN Task View: Phylogenetics, Especially Comparative Methods
Herpetology
.
South American Herpetology
.